Index

_

__call__() (bayesflow.configuration.DefaultCombiner method) (bayesflow.configuration.DefaultJointConfigurator method) (bayesflow.configuration.DefaultLikelihoodConfigurator method) (bayesflow.configuration.DefaultModelComparisonConfigurator method) (bayesflow.configuration.DefaultPosteriorConfigurator method) (bayesflow.helper_classes.SimulationDataset method) (bayesflow.simulation.ContextGenerator method) (bayesflow.simulation.GenerativeModel method) (bayesflow.simulation.MultiGenerativeModel method) (bayesflow.simulation.Prior method) (bayesflow.simulation.Simulator method) (bayesflow.simulation.TwoLevelGenerativeModel method) (bayesflow.simulation.TwoLevelPrior method) __init__() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedModelComparison method) (bayesflow.amortizers.AmortizedPointEstimator method) (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.amortizers.AmortizedTarget method) (bayesflow.amortizers.TwoLevelAmortizedPosterior method) (bayesflow.attention.InducedSelfAttentionBlock method) (bayesflow.attention.MultiHeadAttentionBlock method) (bayesflow.attention.PoolingWithAttention method) (bayesflow.attention.SelfAttentionBlock method) (bayesflow.benchmarks.Benchmark method) (bayesflow.configuration.DefaultJointConfigurator method) (bayesflow.configuration.DefaultLikelihoodConfigurator method) (bayesflow.configuration.DefaultModelComparisonConfigurator method) (bayesflow.configuration.DefaultPosteriorConfigurator method) (bayesflow.coupling_networks.AffineCoupling method) (bayesflow.coupling_networks.CouplingLayer method) (bayesflow.coupling_networks.SplineCoupling method) (bayesflow.default_settings.MetaDictSetting method) (bayesflow.default_settings.Setting method) (bayesflow.experimental.rectifiers.DriftNetwork method) (bayesflow.experimental.rectifiers.RectifiedDistribution method) (bayesflow.helper_classes.EarlyStopper method) (bayesflow.helper_classes.LossHistory method) (bayesflow.helper_classes.MemoryReplayBuffer method) (bayesflow.helper_classes.MultiSimulationDataset method) (bayesflow.helper_classes.RegressionLRAdjuster method) (bayesflow.helper_classes.SimulationDataset method) (bayesflow.helper_classes.SimulationMemory method) (bayesflow.helper_networks.ActNorm method) (bayesflow.helper_networks.ConfigurableHiddenBlock method) (bayesflow.helper_networks.ConfigurableMLP method) (bayesflow.helper_networks.DenseCouplingNet method) (bayesflow.helper_networks.EquivariantModule method) (bayesflow.helper_networks.InvariantModule method) (bayesflow.helper_networks.MCDropout method) (bayesflow.helper_networks.MultiConv1D method) (bayesflow.helper_networks.Orthogonal method) (bayesflow.helper_networks.Permutation method) (bayesflow.inference_networks.EvidentialNetwork method) (bayesflow.inference_networks.InvertibleNetwork method) (bayesflow.inference_networks.PMPNetwork method) (bayesflow.mcmc.MCMCSurrogateLikelihood method) (bayesflow.mcmc.PyMCSurrogateLikelihood method) (bayesflow.simulation.ContextGenerator method) (bayesflow.simulation.GenerativeModel method) (bayesflow.simulation.MultiGenerativeModel method) (bayesflow.simulation.Prior method) (bayesflow.simulation.Simulator method) (bayesflow.simulation.TwoLevelGenerativeModel method) (bayesflow.simulation.TwoLevelPrior method) (bayesflow.summary_networks.DeepSet method) (bayesflow.summary_networks.HierarchicalNetwork method) (bayesflow.summary_networks.InvariantNetwork method) (bayesflow.summary_networks.SequenceNetwork method) (bayesflow.summary_networks.SequentialNetwork method) (bayesflow.summary_networks.SetTransformer method) (bayesflow.summary_networks.SplitNetwork method) (bayesflow.summary_networks.TimeSeriesTransformer method) (bayesflow.trainers.Trainer method) (bayesflow.wrappers.SpectralNormalization method)

A

ActNorm (class in bayesflow.helper_networks) add_entry() (bayesflow.helper_classes.LossHistory method) add_val_entry() (bayesflow.helper_classes.LossHistory method) AffineCoupling (class in bayesflow.coupling_networks) aggregated_error() (in module bayesflow.computational_utilities) aggregated_rmse() (in module bayesflow.computational_utilities) AmortizedLikelihood (class in bayesflow.amortizers)

AmortizedModelComparison (class in bayesflow.amortizers) AmortizedPointEstimator (class in bayesflow.amortizers) AmortizedPosterior (class in bayesflow.amortizers) AmortizedPosteriorLikelihood (class in bayesflow.amortizers) AmortizedTarget (class in bayesflow.amortizers) ArgumentError available_designs (bayesflow.inference_networks.InvertibleNetwork attribute)

B

backprop_step() (in module bayesflow.helper_functions) batchable_context() (bayesflow.simulation.ContextGenerator method) bayesflow.amortizers module bayesflow.attention module bayesflow.benchmarks module bayesflow.benchmarks.bernoulli_glm module bayesflow.benchmarks.bernoulli_glm_raw module bayesflow.benchmarks.gaussian_linear module bayesflow.benchmarks.gaussian_linear_uniform module bayesflow.benchmarks.gaussian_mixture module bayesflow.benchmarks.inverse_kinematics module bayesflow.benchmarks.lotka_volterra module bayesflow.benchmarks.sir module bayesflow.benchmarks.slcp module bayesflow.benchmarks.slcp_distractors module bayesflow.benchmarks.two_moons module bayesflow.computational_utilities module bayesflow.configuration module bayesflow.coupling_networks module bayesflow.default_settings module

bayesflow.diagnostics module bayesflow.exceptions module bayesflow.experimental module bayesflow.experimental.rectifiers module bayesflow.helper_classes module bayesflow.helper_functions module bayesflow.helper_networks module bayesflow.inference_networks module bayesflow.losses module bayesflow.mcmc module bayesflow.networks module bayesflow.sensitivity module bayesflow.simulation module bayesflow.summary_networks module bayesflow.trainers module bayesflow.version module bayesflow.wrappers module Benchmark (class in bayesflow.benchmarks) build() (bayesflow.wrappers.SpectralNormalization method) build_meta_dict() (in module bayesflow.helper_functions)

C

c2st() (in module bayesflow.computational_utilities) call() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedModelComparison method) (bayesflow.amortizers.AmortizedPointEstimator method) (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.amortizers.TwoLevelAmortizedPosterior method) (bayesflow.attention.InducedSelfAttentionBlock method) (bayesflow.attention.MultiHeadAttentionBlock method) (bayesflow.attention.PoolingWithAttention method) (bayesflow.attention.SelfAttentionBlock method) (bayesflow.coupling_networks.AffineCoupling method) (bayesflow.coupling_networks.CouplingLayer method) (bayesflow.coupling_networks.SplineCoupling method) (bayesflow.experimental.rectifiers.DriftNetwork method) (bayesflow.experimental.rectifiers.RectifiedDistribution method) (bayesflow.helper_networks.ActNorm method) (bayesflow.helper_networks.ConfigurableHiddenBlock method) (bayesflow.helper_networks.ConfigurableMLP method) (bayesflow.helper_networks.DenseCouplingNet method) (bayesflow.helper_networks.EquivariantModule method) (bayesflow.helper_networks.InvariantModule method) (bayesflow.helper_networks.MCDropout method) (bayesflow.helper_networks.MultiConv1D method) (bayesflow.helper_networks.Orthogonal method) (bayesflow.helper_networks.Permutation method) (bayesflow.inference_networks.EvidentialNetwork method) (bayesflow.inference_networks.InvertibleNetwork method) (bayesflow.inference_networks.PMPNetwork method) (bayesflow.summary_networks.DeepSet method) (bayesflow.summary_networks.HierarchicalNetwork method) (bayesflow.summary_networks.SequenceNetwork method) (bayesflow.summary_networks.SetTransformer method) (bayesflow.summary_networks.SplitNetwork method) (bayesflow.summary_networks.TimeSeriesTransformer method) (bayesflow.wrappers.SpectralNormalization method)

call_loop() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedPosterior method) check_posterior_prior_shapes() (in module bayesflow.helper_functions) check_tensor_sanity() (in module bayesflow.helper_functions) compute_jacobian_trace() (in module bayesflow.computational_utilities) compute_loss() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedModelComparison method) (bayesflow.amortizers.AmortizedPointEstimator method) (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.amortizers.AmortizedTarget method) (bayesflow.amortizers.TwoLevelAmortizedPosterior method) (bayesflow.experimental.rectifiers.RectifiedDistribution method) ConfigurableHiddenBlock (class in bayesflow.helper_networks) ConfigurableMLP (class in bayesflow.helper_networks) ConfigurationError configurator() (in module bayesflow.benchmarks.bernoulli_glm) (in module bayesflow.benchmarks.bernoulli_glm_raw) (in module bayesflow.benchmarks.gaussian_linear) (in module bayesflow.benchmarks.gaussian_linear_uniform) (in module bayesflow.benchmarks.gaussian_mixture) (in module bayesflow.benchmarks.inverse_kinematics) (in module bayesflow.benchmarks.lotka_volterra) (in module bayesflow.benchmarks.sir) (in module bayesflow.benchmarks.slcp) (in module bayesflow.benchmarks.slcp_distractors) (in module bayesflow.benchmarks.two_moons) ContextGenerator (class in bayesflow.simulation) CouplingLayer (class in bayesflow.coupling_networks) create_config() (bayesflow.inference_networks.EvidentialNetwork class method) (bayesflow.inference_networks.InvertibleNetwork class method) (bayesflow.inference_networks.PMPNetwork class method)

D

DeepSet (class in bayesflow.summary_networks) DefaultCombiner (class in bayesflow.configuration) DefaultJointConfigurator (class in bayesflow.configuration) DefaultLikelihoodConfigurator (class in bayesflow.configuration) DefaultModelComparisonConfigurator (class in bayesflow.configuration) DefaultPosteriorConfigurator (class in bayesflow.configuration) DenseCouplingNet (class in bayesflow.helper_networks)

diagnose_latent2d() (bayesflow.trainers.Trainer method) diagnose_sbc_histograms() (bayesflow.trainers.Trainer method) draw_hyper_parameters() (bayesflow.simulation.TwoLevelPrior method) draw_local_parameters() (bayesflow.simulation.TwoLevelPrior method) draw_mixture_student_t() (in module bayesflow.benchmarks.slcp_distractors) draw_shared_parameters() (bayesflow.simulation.TwoLevelPrior method) drift() (bayesflow.experimental.rectifiers.DriftNetwork method) DriftNetwork (class in bayesflow.experimental.rectifiers)

E

EarlyStopper (class in bayesflow.helper_classes) EquivariantModule (class in bayesflow.helper_networks) estimate() (bayesflow.amortizers.AmortizedPointEstimator method) estimate_means_and_stds() (bayesflow.simulation.Prior method)

evidence() (bayesflow.inference_networks.EvidentialNetwork method) EvidentialNetwork (class in bayesflow.inference_networks) expected_calibration_error() (in module bayesflow.computational_utilities) extract_current_lr() (in module bayesflow.helper_functions)

F

file_name (bayesflow.helper_classes.LossHistory attribute) (bayesflow.helper_classes.RegressionLRAdjuster attribute) (bayesflow.helper_classes.SimulationMemory attribute)

flush() (bayesflow.helper_classes.LossHistory method) format_loss_string() (in module bayesflow.helper_functions) forward() (bayesflow.coupling_networks.CouplingLayer method) (bayesflow.inference_networks.InvertibleNetwork method)

G

gaussian_kernel_matrix() (in module bayesflow.computational_utilities) generate_context() (bayesflow.simulation.ContextGenerator method) GenerativeModel (class in bayesflow.simulation) get_benchmark_module() (in module bayesflow.benchmarks) get_config() (bayesflow.wrappers.SpectralNormalization method) get_coverage_probs() (in module bayesflow.computational_utilities)

get_memory() (bayesflow.helper_classes.SimulationMemory method) get_plottable() (bayesflow.helper_classes.LossHistory method) get_random_student_t() (in module bayesflow.benchmarks.slcp_distractors) get_running_losses() (bayesflow.helper_classes.LossHistory method) get_slope() (bayesflow.helper_classes.RegressionLRAdjuster method) grad() (bayesflow.mcmc.PyMCSurrogateLikelihood method)

H

HierarchicalNetwork (class in bayesflow.summary_networks)

I

InducedSelfAttentionBlock (class in bayesflow.attention) InferenceError InvariantModule (class in bayesflow.helper_networks) InvariantNetwork (class in bayesflow.summary_networks) inverse() (bayesflow.coupling_networks.CouplingLayer method) (bayesflow.inference_networks.InvertibleNetwork method)

inverse_multiquadratic_kernel_matrix() (in module bayesflow.computational_utilities) InvertibleNetwork (class in bayesflow.inference_networks) is_full() (bayesflow.helper_classes.SimulationMemory method) itypes (bayesflow.mcmc.PyMCSurrogateLikelihood attribute)

K

kl_dirichlet() (in module bayesflow.losses)

kl_latent_space_gaussian() (in module bayesflow.losses) kl_latent_space_student() (in module bayesflow.losses)

L

last_total_loss() (bayesflow.helper_classes.LossHistory method) last_total_val_loss() (bayesflow.helper_classes.LossHistory method) load_from_file() (bayesflow.helper_classes.LossHistory method) (bayesflow.helper_classes.RegressionLRAdjuster method) (bayesflow.helper_classes.SimulationMemory method) load_pretrained_network() (bayesflow.trainers.Trainer method) log_density() (bayesflow.experimental.rectifiers.RectifiedDistribution method) log_likelihood() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.mcmc.MCMCSurrogateLikelihood method) log_likelihood_grad() (bayesflow.mcmc.MCMCSurrogateLikelihood method) log_loss() (in module bayesflow.losses)

log_posterior() (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) log_prob() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.amortizers.AmortizedTarget method) (bayesflow.amortizers.TwoLevelAmortizedPosterior method) logits() (bayesflow.inference_networks.PMPNetwork method) logpdf() (bayesflow.simulation.Prior method) loss_to_string() (in module bayesflow.helper_functions) LossError LossHistory (class in bayesflow.helper_classes)

M

maximum_mean_discrepancy() (in module bayesflow.computational_utilities) MCDropout (class in bayesflow.helper_networks) MCMCSurrogateLikelihood (class in bayesflow.mcmc) mean_squared_error() (in module bayesflow.computational_utilities) MemoryReplayBuffer (class in bayesflow.helper_classes) merge_left_into_right() (in module bayesflow.helper_functions) MetaDictSetting (class in bayesflow.default_settings) misspecification_experiment() (in module bayesflow.sensitivity) mmd_hypothesis_test() (bayesflow.trainers.Trainer method) mmd_kernel() (in module bayesflow.computational_utilities) mmd_kernel_unbiased() (in module bayesflow.computational_utilities) mmd_summary_space() (in module bayesflow.losses) module bayesflow.amortizers bayesflow.attention bayesflow.benchmarks bayesflow.benchmarks.bernoulli_glm bayesflow.benchmarks.bernoulli_glm_raw bayesflow.benchmarks.gaussian_linear bayesflow.benchmarks.gaussian_linear_uniform bayesflow.benchmarks.gaussian_mixture bayesflow.benchmarks.inverse_kinematics bayesflow.benchmarks.lotka_volterra bayesflow.benchmarks.sir bayesflow.benchmarks.slcp bayesflow.benchmarks.slcp_distractors bayesflow.benchmarks.two_moons bayesflow.computational_utilities bayesflow.configuration bayesflow.coupling_networks bayesflow.default_settings bayesflow.diagnostics bayesflow.exceptions bayesflow.experimental bayesflow.experimental.rectifiers bayesflow.helper_classes bayesflow.helper_functions bayesflow.helper_networks bayesflow.inference_networks bayesflow.losses bayesflow.mcmc bayesflow.networks bayesflow.sensitivity bayesflow.simulation bayesflow.summary_networks bayesflow.trainers bayesflow.version bayesflow.wrappers

MultiConv1D (class in bayesflow.helper_networks) MultiGenerativeModel (class in bayesflow.simulation) MultiHeadAttentionBlock (class in bayesflow.attention) MultiSimulationDataset (class in bayesflow.helper_classes)

N

non_batchable_context() (bayesflow.simulation.ContextGenerator method)

norm_diff() (in module bayesflow.losses) normalize_weights() (bayesflow.wrappers.SpectralNormalization method)

O

OperationNotSupportedError

Orthogonal (class in bayesflow.helper_networks) otypes (bayesflow.mcmc.PyMCSurrogateLikelihood attribute)

P

perform() (bayesflow.mcmc.PyMCSurrogateLikelihood method) Permutation (class in bayesflow.helper_networks) plot_calibration_curves() (in module bayesflow.diagnostics) plot_color_grid() (in module bayesflow.sensitivity) plot_confusion_matrix() (in module bayesflow.diagnostics) plot_latent_space_2d() (in module bayesflow.diagnostics) plot_losses() (in module bayesflow.diagnostics) plot_mmd_hypothesis_test() (in module bayesflow.diagnostics) plot_model_misspecification_sensitivity() (in module bayesflow.sensitivity) plot_posterior_2d() (in module bayesflow.diagnostics) plot_prior2d() (bayesflow.simulation.Prior method) (in module bayesflow.diagnostics) plot_pushforward() (bayesflow.simulation.GenerativeModel method) plot_recovery() (in module bayesflow.diagnostics) plot_sbc_ecdf() (in module bayesflow.diagnostics) plot_sbc_histograms() (in module bayesflow.diagnostics) plot_z_score_contraction() (in module bayesflow.diagnostics) PMPNetwork (class in bayesflow.inference_networks)

PoolingWithAttention (class in bayesflow.attention) posterior_calibration_error() (in module bayesflow.computational_utilities) posterior_probs() (bayesflow.amortizers.AmortizedModelComparison method) (bayesflow.inference_networks.PMPNetwork method) presimulate_and_save() (bayesflow.simulation.GenerativeModel method) Prior (class in bayesflow.simulation) prior() (in module bayesflow.benchmarks.bernoulli_glm) (in module bayesflow.benchmarks.bernoulli_glm_raw) (in module bayesflow.benchmarks.gaussian_linear) (in module bayesflow.benchmarks.gaussian_linear_uniform) (in module bayesflow.benchmarks.gaussian_mixture) (in module bayesflow.benchmarks.inverse_kinematics) (in module bayesflow.benchmarks.lotka_volterra) (in module bayesflow.benchmarks.sir) (in module bayesflow.benchmarks.slcp) (in module bayesflow.benchmarks.slcp_distractors) (in module bayesflow.benchmarks.two_moons) PyMCSurrogateLikelihood (class in bayesflow.mcmc)

R

RectifiedDistribution (class in bayesflow.experimental.rectifiers) RegressionLRAdjuster (class in bayesflow.helper_classes)

reset() (bayesflow.helper_classes.RegressionLRAdjuster method) root_mean_squared_error() (in module bayesflow.computational_utilities)

S

sample() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedPosterior method) (bayesflow.amortizers.AmortizedPosteriorLikelihood method) (bayesflow.amortizers.AmortizedTarget method) (bayesflow.amortizers.TwoLevelAmortizedPosterior method) (bayesflow.experimental.rectifiers.RectifiedDistribution method) (bayesflow.helper_classes.MemoryReplayBuffer method) (bayesflow.inference_networks.EvidentialNetwork method) sample_data() (bayesflow.amortizers.AmortizedPosteriorLikelihood method) sample_loop() (bayesflow.amortizers.AmortizedLikelihood method) (bayesflow.amortizers.AmortizedPosterior method) sample_parameters() (bayesflow.amortizers.AmortizedPosteriorLikelihood method) save_to_file() (bayesflow.helper_classes.LossHistory method) (bayesflow.helper_classes.RegressionLRAdjuster method) (bayesflow.helper_classes.SimulationMemory method) SelfAttentionBlock (class in bayesflow.attention) SequenceNetwork (class in bayesflow.summary_networks) SequentialNetwork (class in bayesflow.summary_networks) Setting (class in bayesflow.default_settings) SetTransformer (class in bayesflow.summary_networks) ShapeError SimulationDataset (class in bayesflow.helper_classes)

SimulationError SimulationMemory (class in bayesflow.helper_classes) Simulator (class in bayesflow.simulation) simulator() (in module bayesflow.benchmarks.bernoulli_glm) (in module bayesflow.benchmarks.bernoulli_glm_raw) (in module bayesflow.benchmarks.gaussian_linear) (in module bayesflow.benchmarks.gaussian_linear_uniform) (in module bayesflow.benchmarks.gaussian_mixture) (in module bayesflow.benchmarks.inverse_kinematics) (in module bayesflow.benchmarks.lotka_volterra) (in module bayesflow.benchmarks.sir) (in module bayesflow.benchmarks.slcp) (in module bayesflow.benchmarks.slcp_distractors) (in module bayesflow.benchmarks.two_moons) simultaneous_ecdf_bands() (in module bayesflow.computational_utilities) SpectralNormalization (class in bayesflow.wrappers) SplineCoupling (class in bayesflow.coupling_networks) SplitNetwork (class in bayesflow.summary_networks) start_new_run() (bayesflow.helper_classes.LossHistory method) store() (bayesflow.helper_classes.MemoryReplayBuffer method) (bayesflow.helper_classes.SimulationMemory method) SummaryStatsError

T

TimeSeriesTransformer (class in bayesflow.summary_networks) total_loss (bayesflow.helper_classes.LossHistory property) total_val_loss (bayesflow.helper_classes.LossHistory property) train_experience_replay() (bayesflow.trainers.Trainer method) train_from_presimulation() (bayesflow.trainers.Trainer method) train_offline() (bayesflow.trainers.Trainer method)

train_online() (bayesflow.trainers.Trainer method) train_rounds() (bayesflow.trainers.Trainer method) Trainer (class in bayesflow.trainers) TwoLevelAmortizedPosterior (class in bayesflow.amortizers) TwoLevelGenerativeModel (class in bayesflow.simulation) TwoLevelPrior (class in bayesflow.simulation)

U

update_and_recommend() (bayesflow.helper_classes.EarlyStopper method)